Parser options specification. Used to specify the options of a GLModel. Depending on the input file format, not all fields may be defined.
Members
string
# altLoc Optional
which alternate location to select, if present; '*' to load all ; supported by pdb
boolean
# assignBonds Optional
for formats without explicit bonds (e.g. PDB, xyz) infer bonding (default true).
boolean
# doAssembly Optional
boolean dictating weather or not to do assembly ; supported by mcif, pdb
boolean
# dontConnectDuplicatedAtoms Optional
do not detect bonds between symmetries generated with duplicateAssemblyAtoms (cif only - other formats never make bonds between symmetries)
boolean
# duplicateAssemblyAtoms Optional
Set to true if you wish to duplicate assembly atoms otherwise false ; supported by all formats with symmetries. Not duplicating will result in faster rendering but it will not be possible to individually style symmetries.
boolean
# frames Optional
true if you want to add to a new frame and false otherwise ; supported by all
number
# hbondCutoff Optional
maximum distance used for identifying hydrogen bonds when computing secondary structure; supported by pdb, mmtf, cif
boolean
# multimodel Optional
specifies whether or not multiple models are being defined ; supported by xyz,sdf, or mol2
boolean
# noSecondaryStructure Optional
boolean dictating the presence of a secondary structure ; supported by pdb
boolean
# onemol Optional
specifies weather or not the model is of one molecule ; Supported by xyz , sdf , mol2
object
# vibrate Optional
object specifying the vibration behavior ; supported by all
Properties:
| Name | Type | Attributes | Description |
|---|---|---|---|
frames |
number
|
<optional> |
vibrate.frames - number of frames to be created, default to 10 ; supported by all |
amplitude |
number
|
<optional> |
vibrate.amplitude -amplitude of distortion, default to 1 (full) ; supported by all |